Species	Tissue	CellType	Marker	Resource
Mouse	Liver	Activated hepatic stellate cell	Acta2, Col1a1, Des	34089528
Mouse	Liver	Alternatively activated macrophage	Arg1, Fcgr1, Fcgr2b	34755088, 34453962
Mouse	Liver	B cell	Cd79a, Cd79b, Cd19, Ighm, Igkc, Ly6d, Ms4a1, Ebf1, Iglc2, Mzb1, Cd22, Fcmr, H2-Ob, Jchain, Cd2, Cd24a, Cd37, Cd74, Creld2, Derl3, Eaf2, Edem1, Fkbp11, Foxp1, Gm30211, Gm31243, H13, H2-DMb2, Hsp90b1, Ighd, Ltb, Manf, Napsa, Pax5, Pdia4, Pou2af1, Ptprc, Ptprcap, Ralgps2, Sdf2l1, Sec11c, Siglecg, Slpi, Ssr4, Tnfrsf17, Txndc5, Vpreb3, Xbp1	34588223, 30283141, 29474909, 35340039, 35276271, 31398325, 30762896, 35354953, 34900395, 32143547, 33817801, 34253736, 34440898, 33391261, 34648896, 35973424, 35750138, 36120720, 33857287, 30222169, 34469775, 32362324, 21666843
Mouse	Liver	Blood vessel endothelial cell	Plac8, Rbp1	33956074
Mouse	Liver	Capillary endothelial cell	Cd34, Col4a2, Sparc	33956074, 32059779
Mouse	Liver	CD4-positive, alpha-beta T cell	Cd4, Art2b, Cd247, Cd44, Ptprc, Rora, Sell	30447042, 33391261, 35276271, 9341763
Mouse	Liver	CD8-positive, alpha-beta cytotoxic T cell	Cd8a	9804070
Mouse	Liver	CD8-positive, alpha-beta exhausted T cell	Pdcd1	32502604
Mouse	Liver	CD8-positive, alpha-beta T cell	Cd8a, Cd8b1, Cd247, Gzmc, Ly6a, Ly6c2, Spp1	32663198, 30447042, 33391261, 35276271
Mouse	Liver	Centrilobular region hepatocyte	Cyp2e1	29474909, 33103450
Mouse	Liver	Cholangiocyte	Epcam, Krt19, Sox9, Spp1, Cd44, Krt18, Krt7, Krt8, Cldn3, Cmss1, Hnf1b, Krt23, Sorbs2, Sspn	34588223, 35340039, 31398325, 31080134, 32513687, 35354953, 32143547, 33817801, 34253736, 33340713, 35973424, 31080135, 33173221, 36120720, 34089528
Mouse	Liver	Circulating B cell	Cd19, Cd74, Cd79a, Cd79b	30283141
Mouse	Liver	Conventional dendritic cell	Cd9, Dpp4	34469775
Mouse	Liver	Dendritic cell	Irf8, Siglech, Cst3, H2-Ab1, Ccl22, Cd74, Cd83, Flt3, Itgax, Bcl11a, Bcl2a1d, Ccl17, Ccl5, Ccr7, Ccr9, Cd209a, Cd24a, Cd80, Clec10a, Eno3, Epsti1, Fabp5, Fscn1, Gadd45b, Gm2a, Gyg, H2-Aa, H2-Oa, Ifi205, Il12b, Il4i1, Jaml, Klk1, Lsp1, Ly6d, Naaa, Plbd1, Ppt1, Relb, Rnase6, Rogdi, Rtl8a, Septin5, Serpinb6b, Tbc1d4, Tmem123, Tmsb10, Tnni2, Traf1, Tspan3, Wdfy4, Xcr1, Zbtb46, Zmynd15	29474909, 35340039, 35385733, 35276271, 31398325, 35354953, 34900395, 30447042, 33391261, 34648896, 35973424, 35750138, 33857287, 32362324, 31076404, 11929763
Mouse	Liver	Effector memory CD8-positive, alpha-beta T cell	Cx3cr1	32502604
Mouse	Liver	Endothelial cell	Kdr, Pecam1, Clec4g, Lyve1, Cdh5, Ptprb, Eng, Igfbp7, Oit3, Stab2, Aqp1, Bmp2, Dnase1l3, Fcgr2b, Nrp1, Dpp4, Egfl7, Ehd3, F8, Fabp4, Flt4, Il1a, Mmrn2, Pcdh12, Rspo3, Sparc, Ushbp1, Wnt2, Adgrf5, Aqp12, Bgn, C1qtnf1, Cavin2, Cldn5, Clec14a, Ctla2a, Dll4, Fam167b, Flt1, Gpihbp1, Il6st, Ltbp4, Mcam, Met, Myf6, Plekhg1, Plpp3, Selenop, Tek, Timp3, Tinagl1, Vwf, Wnt9b	34588223, 30283141, 29474909, 35340039, 35276271, 31398325, 33956074, 30762896, 32513687, 34469774, 35354953, 34900395, 32143547, 33817801, 34253736, 34440898, 34755088, 33340713, 34648896, 35973424, 32663195, 35449415, 33173221, 36120720, 30222169, 35114417, 32362324, 34089528, 29582235, 28166538
Mouse	Liver	Endothelial cell of lymphatic vessel	Lyve1, Flt4, Pdpn, Prox1	33340713, 32059779
Mouse	Liver	Epithelial cell	Krt19, Epcam, Id3, Krt8	29474909, 35278227, 34253736, 30411082
Mouse	Liver	Erythroblast	Hba-a1, Hba-a2, Hbb-bs, Hbb-bt, Alas2, Bnip3l, Bpgm, Ccl5, Igha, Igkc, Isg20, Retnlg, Ube2l6	29474909
Mouse	Liver	Erythrocyte	Alas2, Hbb-bt	35276271, 32513687
Mouse	Liver	Fat cell	Adipoq, Fabp4	33103450
Mouse	Liver	Fibroblast	Acta2, Cd34, Clec3b, Col1a1, Dpt, Gsn, Mfap4, Col15a1, Col3a1, Dcn, Eln, Entpd2, Fbln2, Msln, Thy1, Upk1b, Upk3b, Col1a2, Col5a1, Fbln1, Gpm6a, Gpx3, Mfap5, Mgp, Mmp2, Nbl1, Pdgfrb, Pecam1, Pi16, Serpinf1, Sfrp1, Slit2, Vim	34588223, 35340039, 35278227, 33930309, 33817801, 34440898, 33103450, 31722201, 33173221, 34089528, 33905375
Mouse	Liver	Granulocyte	Cd24a, Clcf1	29474909, 33857287
Mouse	Liver	Hematopoietic stem cell	Cd34, Cirbp, Colec11, Dcn, Dynll1, Gm10076, Lmo2, Lrat, Reln, Uba52	33340713, 31076404
Mouse	Liver	Hepatic stellate cell	Lrat, Reln, Acta2, Dcn, Ecm1, Colec11, Rgs5, Des, Col3a1, Hgf, Lum, Ngfr, Pdgfrb, Vipr1, Angptl6, Bgn, C1qa, C1qb, C1qc, Cadm1, Col14a1, Col1a1, Gfap, Gucy1a1, Gucy1b1, Igfbp3, Ldb2, Lhx2, Pth1r, Rbp1, Stx2, Syp, Tcf21, Tlcd4, Tpm2, Vim	34588223, 31398325, 35278227, 30762896, 32513687, 34900395, 32143547, 33930309, 33817801, 34253736, 34440898, 34755088, 34648896, 35973424, 31722201, 33173221, 36120720, 31137713, 33905375, 10595912, 9753658, 24657416, 24412384, 24358328, 20618941
Mouse	Liver	Hepatic stem cell	Epcam, Ascl2, Cd44, Dlk1, Eng, Gata4, Itgb1, Krt19, Sox9	26192438, 26557474, 27956228
Mouse	Liver	Hepatoblast	Afp	27904037, 15959514
Mouse	Liver	Hepatocyte	Alb, Apoa1, Apoa2, Ttr, Ass1, Mup3, Serpina1c, Cyp2e1, Glul, Hamp, Mup20, Afp, Apoc1, Apoc3, Bhmt, Pck1, Acly, Agt, Albumin family, Aldob, Ambp, Apoe, Arg1, Asl, Clu, Cyp1a2, Cyp27a1, Cyp2a12, Cyp2f2, Cyp2j6, Cyp3a11, Cyp7b1, Dcn, Fabp1, Fah, G6pc, Gc, Gnmt, Gsta4, Gstm1, Gstp1, Gulo, Hnf1b, Hnf4a, Igfbp2, Igfbp3, Krt18, Krt8, Meg3, Mup11, Mup7, Oat, Ppara, Rbp4, Saa1, Serpina1a, Serpina1b, Serpina1e, Serpina3k, Spp1, Tat, Trp53inp1, Ubb, Ugt1a1, Uox	34588223, 30283141, 29474909, 35340039, 35276271, 31398325, 32513687, 35354953, 34900395, 32143547, 33817801, 34253736, 34755088, 33340713, 33103450, 34648896, 35973424, 32663195, 35449415, 31080135, 34453962, 32362324, 34089528, 25447507, 9705820, 26146954, 28166538
Mouse	Liver	Inflammatory macrophage	Ccl2, Cd163, Mrc1	34755088, 34453962
Mouse	Liver	Kupffer cell	Clec4f, Adgre1, Cd68, Timd4, Csf1r, Irf7, Lyz2, C1qb, C1qc, Vsig4, Wfdc17, Aif1, Apoc1, C1qa, Cd5l, Clec1b, Cxcl13, Fabp7, Fcna, Folr2, Marco, Mrc1, Spic, Adgre4, Apoe, Atp1b3, AW112010, BC005537, Blvrb, C4b, C6, Ccl24, Ccl6, Ccnb2, Cd163, Cd207, Cd302, Cd44, Cd74, Cfp, Clec4n, Ctla2b, Ctsd, Ctss, Ear2, Fcgr4, Ftl1-ps1, Hmox1, Id3, Ifitm2, Igf1, Il18bp, Itgal, Itgam, Lgals3, Lpl, Mmp12, Ninj1, Paqr9, Pltp, Ptprj, Sdc3, Slc40a1, Stmn1, Tnfaip2, Top2a, Trem2, Tyrobp, Ube2c, Vcam1	30283141, 29474909, 35385733, 35276271, 34469774, 34900395, 32143547, 33817801, 34440898, 34755088, 32663195, 35750138, 36120720, 30222169, 34469775, 32362324, 31076404, 34089528, 20054868, 28166538
Mouse	Liver	Macrophage	Adgre1, Ccr2, Csf1r, Itgam, Cd14, Clec4f, Cx3cr1, Lyz2, Cd68, C1qb, Fcgr1, Ms4a7, S100a6, Apoe, Bcl2a1b, C1qa, C1qc, Cd5l, Chil3, Clec4b1, Coro1a, F13a1, Fabp5, Fcgr3, Fn1, Itgax, Lgals3, Ms4a6b, S100a11, S100a4, Sirpa, Trem2, Cbfa2t3, Ccl9, Cd207, Cd209a, Cd63, Cd7, Cd74, Cd9, Chil1, Crip1, Ctss, Cxcl14, Cxcr3, Dusp1, Emb, F10, Flt3, Fos, Fxyd5, Gm2a, Gm9733, Gpnmb, H2-Aa, H2-Ab1, H2-Eb1, H2-M2, H2-Oa, Hexb, Hp, Ifitm2, Ifitm6, Il1b, Il1rn, Klrd1, Lgals1, Lilrb4a, Lsp1, Ly6c2, Lyz1, Marco, Mcemp1, Mgst1, Mmp12, Ms4a4c, Ms4a6c, Msrb1, Napsa, Pf4, Plac8, S100a10, Sdc3, Sirpb1c, Tagln2, Thbs1, Tppp3, Vim, Vsig4, Wfdc17	34588223, 29474909, 35340039, 35385733, 35276271, 31398325, 30762896, 32513687, 35354953, 34900395, 30447042, 33391261, 34755088, 33340713, 33103450, 34648896, 34995099, 35973424, 32663195, 35449415, 35750138, 30222169, 34469775, 32362324, 31076404
Mouse	Liver	Mature B cell	Cd19, Cd38, Cd79a, Myc, Pdia4	35276271, 32513687
Mouse	Liver	Mature hepatocyte	Alb, Apoc1, Ttr	31080134
Mouse	Liver	Mature NK T cell	Nkg7, Ccl5, Ncr1, Thy1, Xcl1, Bcl2, Cd3d, Cd3e, Cd3g, Cd7, Ctla4, Ctsw, Cxcl10, Cxcr6, Gimap3, Gimap4, Gzma, Gzmk, Il2rb, Klrb1c, Klre1, Lat, Lck, Ltb, Ms4a4b, Ptprcap, Rgs1, Skap1, Tmsb10, Trac, Trbc2, Zap70	30283141, 34900395, 33391261, 35276271, 32502604, 34469775, 32362324
Mouse	Liver	Memory B cell	Maml2, Plp2	35276271
Mouse	Liver	Mesenchymal cell	Acta2, Col1a1, Col1a2, Atl1, Col3a1, Fn1, Tagln, Vim	35278227, 35354953, 33340713, 28623940
Mouse	Liver	Mesenchymal stem cell	Eng, Itgb1, Ly6a	35278227
Mouse	Liver	Mesothelial cell	Msln, Gpm6a, Angptl7, C3, Crip1, Krt19, Slpi, Upk1b, Upk3b, Wt1	35278227, 33817801, 34440898
Mouse	Liver	Microvascular endothelial cell	Gata4, Oit3, Stab2	35021856
Mouse	Liver	Monocyte	Cd14, Ccr2, Itgam, Cd74, Ly6c1, Ly6c2, Lyz1, Ccdc88a, Cd209a, Cd36, Cd5l, Cd9, Chil3, Clec4f, Csf1r, Dpp4, Fn1, Ly6g, Lyz2, Ms4a4c, Ms4a6c, Mycl, Plac8, S100a4, S100a8, S100a9, Scarb1	34588223, 32663198, 35354953, 34900395, 34755088, 34648896, 35750138, 33857287, 34469775, 29525783, 26699145, 23259611
Mouse	Liver	Myeloid suppressor cell	Itgam, Ly6c1, Ly6g	32663198
Mouse	Liver	Myofibroblast cell	S100a6, Acta2, Des, Igfbp5, Igfbp6, Krt19, Nt5e	34755088, 31137713, 22899823, 9828215
Mouse	Liver	Naive thymus-derived CD8-positive, alpha-beta T cell	Lef1	32502604
Mouse	Liver	Natural killer cell	Nkg7, Klrb1c, Ncr1, Ccl5, Cxcr6, Gzma, Il2rb, Klre1, Xcl1, Cd3g, Gzmb, Zap70, Bcl2, Cd3d, Cd7, Ctsw, Eomes, Gimap3, Gimap4, Itga1, Itga2, Klra3, Lat, Lck, Ltb, Ms4a4b, Ptprcap, Skap1, Spic, Thy1, Tmsb10	30283141, 35340039, 35276271, 30762896, 32513687, 34900395, 30447042, 33391261, 35973424, 35348580, 35750138, 36120720, 34469775, 32362324, 26312867, 20460885
Mouse	Liver	Neutrophil	S100a8, Csf3r, Mmp9, S100a9, Camp, Ly6g, Ngp, Retnlg, Cxcr2, Mmp8, Slpi, Anxa1, Ccrl2, Cd24a, Cd33, Chil3, Gda, Hdc, Hp, Ifitm6, Il1b, Il1r2, Lcn2, Lrg1, Mcemp1, Msrb1, Pglyrp1, S100a11, Trem1, Wfdc21	34588223, 29474909, 35340039, 35385733, 35276271, 30762896, 35354953, 34900395, 30447042, 33391261, 34648896, 35750138, 30222169, 32362324
Mouse	Liver	Periportal region hepatocyte	Pck1, Adh1, Aldob, Arg1, Ass1, Cdh1, Cyp2f2, Hal, Igf1, Pigr, Tat, Uox	30283141, 29474909, 35276271, 34900395, 33103450
Mouse	Liver	Peritoneal macrophage	Gata6	35385733
Mouse	Liver	Plasma cell	Cntnap2, Cox6a2, Eaf2, Jchain, Ly6c2	35276271, 31398325, 32513687, 34253736
Mouse	Liver	Plasmacytoid dendritic cell	Siglech, Ccr9, Irf8, Atp1b1, Bst2, Cd209d, Cd300c, Cox6a2, Dnajc7, Klk1, Lgals1, Ly6c2, Ly6d, Rnase6, Runx2, Sell, Smim5, Bcl11a, D13Ertd608e, Klk1b27, Pacsin1, Plac8, Rpgrip1, Spib, Tcf4, Tsc22d1, Upb1	35973424, 30222169, 34469775, 32362324
Mouse	Liver	Progenitor cell	Krt19, Prom1, Sox9, Epcam, Hnf1b, Cftr, Foxj1, Igdcc4, Kit, Krt23, Mmp7, Nanog, Spp1, St14, Thy1, Twf1	31080134, 33173221, 27956228, 27748507, 26074697, 19171902, 18004941, 17392494, 29624127
Mouse	Liver	Proliferating kupffer cell	Birc5, Ccnb2, Cdca3, Cdk1, Cenpa, Cks1b, Cks2, H2ac23, H2ac24, H2ax, Hmgb2, Lockd, Mki67, Pclaf, Smc2, Smc4, Stmn1, Top2a, Tuba1b, Tubb5, Ube2c	32362324
Mouse	Liver	Quiescent Hepatic stellate cell	Des, Lrat	34089528
Mouse	Liver	Regulatory B cell	Apoe, Ccdc28b, Ccnd2, Ccr1, Cd300lf, Cd9, Csf2rb, Fcrl5, Mzb1, Pdia4, Plac8, Ptpn22, Rilpl2, Rplp0, S100a6, Slc7a7, Sp140, Zbtb20	34594327
Mouse	Liver	Regulatory T cell	Foxp3, Cd247, Cd4, Il2ra	30447042, 27770236
Mouse	Liver	Resting natural killer cell	Cd7, Tyrobp	35276271
Mouse	Liver	Stem cell	Kit, Epcam, Nanog, Thy1, Afp, Cd34, Gli1, Igdcc4, Isl1, Pou5f1, Prom1, Sox2	35278227, 35114417, 25132272, 22793052, 20828852, 20119623, 19171902, 19131261, 17392494, 29624127
Mouse	Liver	T cell	Cd3d, Cd3g, Cd3e, Cd4, Trbc2, Cd8a, Nkg7, Thy1, Ccl5, Cd28, Trac, Trbc1, Ahnak, Atp2b1, Ccr9, Cd24a, Cd8b1, Cxcr6, Gzma, Gzmb, Il7r, Lat, Lef1, Macf1, Myb, Sox4, Tcf7	29474909, 35340039, 35276271, 31398325, 32513687, 35354953, 34900395, 32143547, 33817801, 34253736, 33391261, 33340713, 34648896, 35973424, 35750138, 36120720, 30222169, 34469775, 27073440, 25792654, 25338846, 21709007, 10088780, 8887497, 8567401
Mouse	Liver	Tissue-resident memory T cell	Btla, Cd74, Cd93, Trdc	35276271
Mouse	Liver	Vascular associated smooth muscle cell	Acta2, Cnn1, Myh11, Tagln, Pln, Tpm2	35278227, 31722201