Species	Tissue	CellType	Marker	Resource
Mouse	Colon	B cell	Cd79a, Cd19, Cd79b, Fcer2a, Ptprc, Aplp2, Bank1, Cd22, Cxcr4, Ighd, Ighm, Mki67, Ms4a1, Plpp5, Pou2af1	34417435, 35479413
Mouse	Colon	Basophil	Itga2, Itga2b, Kit	35479413
Mouse	Colon	Blood vessel endothelial cell	Kdr, Pecam1, Plvap	35085231
Mouse	Colon	Brush cell	Dclk1, Irag2, Trpm5, Alox5ap, Avil, Cd24a, Fyb, Il17rb, Kctd12, Ltc4s, Ptgs1, Rgs13, Sh2d6, Siglecf, St18, Tuba1a	30283141, 35369066, 34815312, 35988719
Mouse	Colon	Cancer-associated fibroblast	Bgn, Col1a1, Col3a1, Col5a1, Fstl1	34417435
Mouse	Colon	CD8-positive, alpha-beta cytotoxic T cell	Ccl4, Ccl5, Ctla2a, Gzmk	35479413
Mouse	Colon	CD8-positive, alpha-beta T cell	Cd8a, Cxcr6, Nrn1	34417435
Mouse	Colon	Chromaffin cell	Chga, Chgb	30283141
Mouse	Colon	Cycling stem cell	Aqp1, Ascl2, C1qbp, Csrp2, Hspd1, Kcnq1, Lgr5, Mgst1, Mki67, Ppia, Rack1, Ran, Smoc2, Stmn1, Tifa, Tuba1b, Tubb5, Ube2c, Ybx1	34815312
Mouse	Colon	Dendritic cell	Ccl17, Cd24a, Cst3, Flt3, Fscn1, Itgae, Itgax, Kit, Plac8, Ptprc, Retnla, Siglece, Siglecf, Top2a, Zbtb46	31772323, 35479413
Mouse	Colon	Endothelial cell	Pecam1	30445793
Mouse	Colon	Endothelial cell of lymphatic vessel	Lyve1, Prox1	35085231, 32059779
Mouse	Colon	Enterocyte	Krt20, Clec2h, Fabp2, Mxd1, Pmp22, Alpi, Apoa1, Cdkn1a, Ces2a, Ces2c, Ces2e, Chp2, Cldn23, Coro2a, Cox7a1, Cyp2c65, Cyp2c68, Dgkq, Dpep1, Emp1, Ethe1, Fam3b, Fhl1, Fth1, Gde1, Gsdmc4, Guca2a, Il18, Krt19, Krt8, Lgals3, Lgals4, Lypd8, Maob, Mep1a, Plp2, Rbp2, Rhoc, Selenbp1, Slc26a3, Sprr2a3	30283141, 35369066, 32518403, 34815312
Mouse	Colon	Enterocyte of epithelium of large intestine	Cdk4, Mcm5, Mcm6, Mki67, Pcna, Ascl2, Axin2, Lgr5, Slc12a2	35369066
Mouse	Colon	Enteroendocrine cell	Chga, Chgb, Tph1, Bex2, Cpe, Ddc, Insm1, Map1b, Marcksl1, Neurod1, Pcsk1, Pcsk1n, Resp18, Scg5	35369066, 32518403, 34815312
Mouse	Colon	Eosinophil	Ccr3, Il5ra, Itgam, Siglece, Siglecf	35479413
Mouse	Colon	Epithelial cell	Epcam, Krt20, Krt8, Muc2, Vil1	33444816, 35479413
Mouse	Colon	Fibroblast	Col1a1, Loxl1, Cd34, Col1a2, Col3a1, Col5a1, Dcn, Fap, Fbln1, Fbln2, Fn1, Loxl2, Lum, Mmp2, Pdgfra, S100a4	32769974, 32518403, 35085231, 34030676
Mouse	Colon	Glial cell	Fabp7, Gfap, Plp1, S100b	35085231, 33444816
Mouse	Colon	Goblet cell	Muc2, Tff3, Agr2, Spdef, Ang, Anxa3, Atoh1, Atp5g3, Bcas1, Cbfa2t3, Ccl6, Ccl9, Csrp3, Etv5, Fcgbp, Foxa3, Galnt10, Galnt5, Gfpt1, Guca2a, Guca2b, Kcnh3, Kcnk6, Manf, Mgst1, Mlph, Mon1a, Mt3, Rab27b, Ramac, Rassf6, Rep15, Rps17, Sec24d, Sidt1, Smim14, Spink4, Stard10, Stk38l, Syt7, Sytl2, Tpd52, Tpd52l1, Tspan13, Txndc5	30283141, 35369066, 34815312
Mouse	Colon	Helper T cell	Ccr6, Cd4, Cxcr3, Cxcr5, Fosl1, Gata3, Icos, Il1rl1, Il7r, Mt1, Pdcd1, Slfn5, Tbx21	34417435
Mouse	Colon	ILC1	Ctsw, Klrc1, Klrd1, Klrk1, Ncr1, Xcl1	32367039
Mouse	Colon	Immature neuron	Dcx	33444816
Mouse	Colon	Interstitial cell of Cajal	Ano1, Kit	35085231
Mouse	Colon	Intestinal crypt stem cell	Alcam, Cd24a, Cd44, Kit, Lgr5	23644405, 17934449
Mouse	Colon	Macrophage	Adgre1, Cd68, Apoe, Ccr2, Cd63, Cx3cr1, H2-M2, Vcam1, Acp5, Adgre4, Apoc1, C1qa, C1qb, Ccl2, Ccl4, Ccl7, Cd163, Csf1r, Cxcl9, Dnase1l3, Dnmt3a, Dst, Emilin2, F13a1, Fabp4, Fabp5, Fcgr4, Folr2, Ftl1, Ftl1-ps2, Ftl2-ps, Hes1, Hmox1, Hpgds, Hspa1a, Hspa1b, Ifi27l2a, Ifit1, Ifit2, Isg15, Itgam, Jun, Lgmn, Maf, Marco, Mertk, Mmp13, Mrc1, Ms4a7, Nupr1, Pf4, Pgf, Ptprc, Rsad2, Selenop, Tgm2, Thbs1, Trem2, Zeb2	31772323, 34417435, 35479413
Mouse	Colon	Mast cell	Itgb7, Kit, Ptprc	35479413
Mouse	Colon	Megakaryocyte	Cavin2, Cd9, Cxcr4, Gng11, Gp1ba, Itga2b, Kit, Myl9, Nrgn, Pf4, Ppbp, Slamf1, Sparc, Tubb1	35479413
Mouse	Colon	Memory T cell	Cd247, Cd4, Cd44, Foxp3, Klrg1, Lat, Ly6c2, Sell	30737144, 34417435
Mouse	Colon	Mesenchymal stem cell	Pdgfra, Smoc2	35085231
Mouse	Colon	Monocyte	Ccr2, Cd14, Csf1r, Cx3cr1, Fcgr1, Fn1, Ifitm3, Itgam, Ly6c1, Ly6c2	35479413
Mouse	Colon	Mucosal invariant T cell	Fcgr4, Slc4a10	35479413
Mouse	Colon	Natural killer cell	Ncam1, Gzma, Gzmb, Gzmc, Ifng, Klra4, Klra8, Klrb1a, Klrb1f, Klrd1, Ncr1, Tyrobp	34417435, 35479413
Mouse	Colon	Neuron	Elavl4, Tubb3	33444816
Mouse	Colon	Neutrophil	Ccrl2, Csf3r, Cxcr2, Lcn2, Ly6g6e, Msrb1, Retnlg, S100a8, S100a9, Slfn4	35479413
Mouse	Colon	Pericyte	Rgs5, Anpep, Des, Mcam, Notch3, Pdgfrb, Tagln	32769974, 32747828, 35085231
Mouse	Colon	Plasma cell	Ighg, Ighg2c, Igkc, Iglv1, Jchain, Mzb1, Sdc1, Xbp1	35479413
Mouse	Colon	Plasmacytoid dendritic cell	Ccdc50, Irf7, Irf8, Spib, Tcf4	35479413
Mouse	Colon	Proliferating stem cell	Lgr5, Mki67	30283141
Mouse	Colon	Regulatory T cell	Foxp3, Cd4, Il2ra, Ctla4, Il7r, Izumo1r, Nrp1, Penk	30737144, 34417435, 35479413
Mouse	Colon	Smooth muscle cell	Acta2, Cnn1, Mylk	35085231, 33444816
Mouse	Colon	Stem cell	Lgr5, Acot1, Ascl2, Birc5, Ccdc34, Cd44, Eef1a1, Eef1b2, Gas5, Gjb3, Gm6368, Myc, Prom1, Rack1, Rps3a1, Sdc4, Snhg1, Soat1, Top2a, Ung, Zfas1	30283141, 32518403, 34815312, 29434827
Mouse	Colon	T cell	Brca1, Cd3d, Cd3e, Cd3g, Cd44, Cd69, Cdc6, Clspn, Esco2, Grap2, H2ac23, H2ac24, Il2ra, Kbtbd11, Neil3, Pclaf, Rrm2, Spc24	34417435
Mouse	Colon	Transit amplifying cell	Rpl5, Rps11, Aldh1b1, Atp5g2, Clec2h, Gpx2, Hmgb1, Hsp90ab1, Ifngr2, Mep1a, Nrarp, Ptma, Sfn, Ubb, Wdr89	35369066, 32518403, 34815312