Species	Tissue	CellType	Marker	Resource
Human	Intestine	Alpha-beta T cell	FOXP3, IL17A	20952660
Human	Intestine	B cell	BANK1, CD19, CD79A, CD79B, IGHD, MS4A1, MZB1	35549406, 35338007, 33406409
Human	Intestine	CD4-positive, alpha-beta T cell	CD3D, CD3E, CD3G, CD4	35338007
Human	Intestine	CD8-positive, alpha-beta T cell	CD3D, CD3E, CD3G, CD8A, CD8B	35338007
Human	Intestine	Central memory CD4-positive, alpha-beta T cell	CCR7, CD4, SELL	35549406
Human	Intestine	Central memory CD8-positive, alpha-beta T cell	CCR7, CD8A, SELL	35549406
Human	Intestine	Dendritic cell	BATF3, CD1D, CD207	33406409
Human	Intestine	Early lymphoid progenitor	ETS1, GATA3, IL32	35549406
Human	Intestine	Effector memory CD4-positive, alpha-beta T cell	AQP3, ITGB1, KLRB1	35549406
Human	Intestine	Effector memory CD8-positive, alpha-beta T cell	CCL5, CD8A, CXCR6, GZMK, ITGA1, ITGAE	35549406
Human	Intestine	Endothelial cell	CDH5, CD34, CLDN5, KDR, MCAM, PECAM1, PROM1, PTPRC	33278341, 35649411, 25591800
Human	Intestine	Endothelial cell of artery	AFG1L, CHST1, DLL4, EDNRB, GJA5, HEY1, IGFBP3, ITGB4, LGALS1, PRND, UNC5B, VWA1	33406409
Human	Intestine	Enterochromaffin-like cell	CHGA, RXFP4, TPH1	33406409
Human	Intestine	Enterocyte	ALPI, FABP2, SLC26A3, TMEM37	31753849
Human	Intestine	Enteroendocrine cell	CHGA, CHGB, CPE, NEUROD1, PYY, REG4	31753849
Human	Intestine	Eosinophil	CPA3, MS4A2, TPSAB1	33406409
Human	Intestine	Epithelial cell	EPCAM, ALPI, CDH1, CDX2, CLDN4	33278341, 35649411, 35338007
Human	Intestine	Fibroblast	COL1A1	35649411
Human	Intestine	Gamma-delta T cell	CD8A, IL2RB, TRDC	33406409
Human	Intestine	Glial cell	GFRA3, APOE, BCAN, CCN2, CEBPD, ENTPD2, FGL2, HMGA2, LAMP5, PHOX2B, RXRG, SOCS3, SOX6, SPRY1, ZFP36	35649411, 33406409
Human	Intestine	Goblet cell	SPINK4, WFDC2, ATOH1, CLCA1, FFAR4, MKI67, MUC2, MYC, PBK, PTGDR, SPDEF, TFF3, TRABD2A, UBE2C, ZG16	31753849, 33406409
Human	Intestine	Inhibitory motor neuron	ETV1, HTR2B, NOS1, VIP	33406409
Human	Intestine	Inner muscularis cell	AHNAK2, HMGCS1, HOXC8, IGF1, IGFBP2, IGFBP7, KRT17, MORN5, MOXD1, NPNT, PLCG2, PLN, PMAIP1, PNCK, TMEM158	33406409
Human	Intestine	Interneuron	ACHE, ONECUT2, PENK, TAC1	33406409
Human	Intestine	Interstitial cell of Cajal	ANO1, ETV1, SPON2	33406409
Human	Intestine	Intestinal crypt stem cell	DCLK1, PHLDA1	21558389, 19676123
Human	Intestine	Intestinal tuft cell	GFI1B, POU2F3, TRPM5	31753849
Human	Intestine	Leydig cell	BMP4, ITGA8, PDGFRA	33406409
Human	Intestine	Macrophage	C1QA, C1QB, CD68, FGL2, FOLR2, HES1, RNASE1, SLC40A1, SPP1, TREM2	35549406, 35338007, 33406409
Human	Intestine	Mast cell	CPA3, TPSAB1, TPSB2	35549406
Human	Intestine	Mesenchymal cell	ACTA2, COL1A1, COL1A2, DCN, MYLK, TAGLN	33278341
Human	Intestine	Mesothelial cell	GATA6, HPGD, IL18, SOX6, STX2, WNT10A	33406409
Human	Intestine	Monocyte	CLEC12A, FCN1, S100A8	33406409
Human	Intestine	Mononuclear phagocyte	FGL2, HLA-DPA1, HLA-DQA1	35549406
Human	Intestine	Mucosal invariant T cell	KLRB1, SLC4A10, TRAV1-2	35549406
Human	Intestine	Muscle precursor cell	HOXC5, MYOCD, PLPP2	33406409
Human	Intestine	Myeloid dendritic cell	ADGRE1, CCR7, CD1A, CD1B, CD1C, CD207, CD209, CD4, CD40, CD80, CD83, CD86, HLA-DR family, ITGA4, ITGAM, ITGAX, LY75, MHC Class II, NRP1, PDCD1LG2	Company
Human	Intestine	Myofibroblast cell	ACTA2, MYH11, ADAM28, ADAMDEC1, GREM2, MFAP4, MYL9	35649411, 33406409
Human	Intestine	Naive T cell	CD27, CD3D, CD3G	33406409
Human	Intestine	Natural killer cell	GNLY, NKG7, CD160, CD8A, IL2RB, TRDC, XCL2	35549406, 33406409
Human	Intestine	Neuron	ELAVL4, SCGN, ADCYAP1, CASZ1, CRABP1, DGKG, DLL1, DLL3, GFRA2, KCTD16, NEUROD6, NOS1, NPY2R, PLP1, RAMP1, S100B, SST, SSTR2, STMN2, VIP	33278341, 33406409
Human	Intestine	Paneth cell	DEFA5, DEFA6, IL9, PRSS2	33406409, 19342650
Human	Intestine	Pericyte	THBS1, CYGB, GPAT2, WNT6, ACTA2, ADIRF, BMPER, CEBPD, MBP, MYH11, NFKBIA, SPON2, TESC	33406409
Human	Intestine	Plasma cell	JCHAIN	35649411
Human	Intestine	Plasmablast	JCHAIN, MZB1, XBP1	35549406
Human	Intestine	Plasmacytoid dendritic cell	IL3RA, LILRA4, PTCRA	33406409
Human	Intestine	Precursor B cell	IGLL1, RAG1, VPREB1	33406409
Human	Intestine	Progenitor cell	CDK6, CLPS, FABP5, HMGA2, LCN2, MBP, MDK, MUC4, NEUROG3, PLA2G2A, SOX9, THY1	31753849, 33406409, 34239074
Human	Intestine	Regulatory T cell	BIRC3, CCR7, CD27, CTLA4, FOXP3, IKZF4, IL2RA, MIR155HG, SMS	35549406
Human	Intestine	Secretory progenitor cell	GHRL, ISL1, NEUROG3	33406409
Human	Intestine	Stem cell	LGR5, SMOC2, ALCAM, ASCL2, BMI1, CASP1, GRIA4, LEFTY1, PLA2G2A, PTGDR, RGMB	31753849, 33406409, 20826154, 16874656, 27704362
Human	Intestine	T cell	CD3D, CD3E, CD3G, GNG4, PDCD1, ZNF683	35549406, 11171826
Human	Intestine	T follicular helper cell	CXCR5, ICOS, PDCD1	35549406
Human	Intestine	T-helper 1 cell	CCL5, CXCR3, TBX21	35549406
Human	Intestine	T-helper 17 cell	CCR6, IL7R, ZBTB16	35549406
Human	Intestine	Transit amplifying cell	CCNA2, CENPM, HMGB3, MCM5, MND1, PCNA, TACC3, TK1, TOP2A, UBE2T	31753849, 33406409
Human	Intestine	Type A enteroendocrine cell	CLEC4G, GHRL, MLN	33406409
Human	Intestine	Type D enteroendocrine cell	HHEX, PCP4, SST	33406409
Human	Intestine	Type I enteroendocrine cell	CCK, GC, TDO2	33406409
Human	Intestine	Type L enteroendocrine cell	GCG, PYY, UCN3	33406409
Human	Intestine	Type M enteroendocrine cell	CLEC4G, GHRL, MLN	33406409
Human	Intestine	Type N enteroendocrine cell	HOPX, MEP1A, NTS	33406409
Human	Intestine	Vein endothelial cell	ACKR1, ADGRG6, APLNR, CALCRL, CCL2, CD69, JUNB, LDHB, LRG1, PLVAP, PRCP, RGCC, STMN1, VWF, ZFP36	33406409