Species	Tissue	CellType	Marker	Resource
Human	Colon	Alternatively activated macrophage	CD163	35221332
Human	Colon	B cell	CD79A, CD79B, CD19, CD38, BLK, DERL3, IGHA1, IGHG1, MKI67, MS4A1, MZB1, TOP2A	35549406, 28319088, 36460793, 32561858, 31348891, 35697807, 34417225
Human	Colon	B-1 B cell	DEFA6, ITLN2, LYZ, PRSS2, REG3A	34158745
Human	Colon	Cancer-associated fibroblast	FAP, COL1A1, COL1A2, COL6A1, COL6A2, COL6A3, DCN, THY1	32302573, 28319088
Human	Colon	Capillary endothelial cell	CA4, CD36	32561858
Human	Colon	CD14-positive monocyte	CD14, CD36, S100A12, S100A8, S100A9, VCAN	32302573
Human	Colon	CD16-negative natural killer cell	CD160, GNLY, NKG7	35549406
Human	Colon	CD16-positive natural killer cell	FCGR3A, GNLY, NKG7	35549406
Human	Colon	CD4-positive, alpha-beta T cell	CCR6, CD4, FAM177A1, UBE2S	31348891, 34793335, 34417225, 27835617
Human	Colon	CD8-positive, alpha-beta cytotoxic T cell	GNLY, GZMA, H4C3, HMGB2, PCLAF, PKM, STMN1, TUBB	34158745
Human	Colon	CD8-positive, alpha-beta T cell	CD8A, CD3D, CD3E, CD3G, PTPRC	35221332, 31348891, 34417225
Human	Colon	Central memory CD4-positive, alpha-beta T cell	CCR7, CD4, SELL	35549406
Human	Colon	Central memory CD8-positive, alpha-beta T cell	CCR7, CD8A, SELL	35549406
Human	Colon	Central memory T cell	CD3D, CD3E, CD3G, IL7R, LTB, PTPRC	35221332
Human	Colon	Classical monocyte	CD14, S100A12, S100A9	35549406, 31348891
Human	Colon	Dendritic cell	CLEC9A, CCL17, CD1C, CD207, LILRA4, CD1E, IDO1	32561858, 31348891, 34158745
Human	Colon	Dendritic cell, human	CLEC10A, MKI67, TOP2A	35549406
Human	Colon	Effector memory CD4-positive, alpha-beta T cell	AQP3, ITGB1, KLRB1	35549406
Human	Colon	Effector memory CD8-positive, alpha-beta T cell	CCL5, CD8A, CXCR6, GZMK, ITGA1, ITGAE	35549406
Human	Colon	Effector memory CD8-positive, alpha-beta T cell, terminally differentiated	CX3CR1, GNLY, GZMB	35549406
Human	Colon	Effector T cell	GNLY	34793335
Human	Colon	Endothelial cell	VWF, PECAM1, CLDN5, ENG, ACKR1, ADAMDEC1, APOLD1, CASP1, CDH5, CFD, CTSC, CXCL12, CXCL14, CYSLTR1, GLT8D2, HOXD1, IRF9, JCHAIN, KRT222, LUM, MCAM, MEOX1, NOV, PDE1C, PLAU, RASA4, RND1, SELP, SERTAD3, SLC14A1, TMEM176B, TRIB1	28319088, 36460793, 35221332, 32561858, 30270042, 31348891, 34910928, 31242503, 35697807
Human	Colon	Endothelial cell of artery	FBLN5, GJA5	32561858
Human	Colon	Endothelial cell of lymphatic vessel	CCL21, CLU, EFEMP1, LYVE1, MMRN1, PDPN, PROX1	32561858, 34158745
Human	Colon	Endothelial cell of vascular tree	ACKR1, AKAP12, CA4, CCL2, CYR61, FCGR2A, FCGR2B, FCGR2C, FLT1, IGHG1, IGHG3, IGHG4, SELE	34158745
Human	Colon	Enterocyte	GUCA2B, SLC26A3, BEST4, CA1, CDH17, GUCA2A, KRT20	32302573, 35726067, 35221332, 31753849, 31348891, 35688820
Human	Colon	Enterocyte of colon	AQP8, CA1, CA2, CEACAM1, GUCA2B, KRT20, MS4A12, SLC26A3	28319088
Human	Colon	Enteroendocrine cell	CHGA, CRYBA2, SCGN	35221332, 31753849, 31348891, 32199615
Human	Colon	Epithelial cell	EPCAM, KRT19, KRT18, KRT20, MT1G, ITLN1, MT1E, SLC26A3, SLPI, ZG16, ABCC3, ALPI, APOA1, APOC3, BEST4, CA1, CA2, CA4, CA7, CD24, CDH1, CLCA1, CLDN7, CYP3A4, DUOX2, EMP1, ENPEP, FABP1, H4C3, HMGB2, HMGN2, KHK, KRT7, LCN2, LYZ, MGAM, MMP7, MT-CO2, MUC1, OCIAD2, OLFM4, OTOP2, PI3, PLA2G2A, PLAC8, RBP2, REG1A, SAA1, SLC15A1, SLC26A2, SPIB, STAT3, STT3B, TFF3, TIMP1, TM4SF4, TUBA1B, VIL1, WFDC2	28319088, 35726067, 34039410, 36460793, 35221332, 32561858, 31348891, 34158745, 35963362, 35697807, 32753478
Human	Colon	Exhausted T cell	CTLA4, HAVCR2, LAG3, PDCD1, TIGIT	34793335
Human	Colon	Fibroblast	DCN, COL1A1, COL3A1, BGN, ACTA2, ADAM28, AGT, ARHGDIB, CARD16, CCL13, CCL8, CNN1, COL1A2, CSRP2, CTHRC1, CXCL6, DES, HAPLN1, KRT1, MEF2C, MFAP5, MYH11, PCOLCE, PI16, PLAT, PLN, RGS5, SFRP2, SPARC, STMN2	28319088, 36460793, 35221332, 32561858, 31348891, 34158745, 34910928, 35697807
Human	Colon	Follicular B cell	MS4A1, APC, CD22, CD37, CD52, CD79A, CD79B, CXCR5, HLA-DRB1, LTB, TNFRSF13B	35549406, 35221332, 31348891, 34158745
Human	Colon	Gamma-delta T cell	TRDC, CCL5, MKI67, TOP2A, TRGC1	35549406
Human	Colon	Germinal center B cell	CD40, POU2AF1, SUGCT	35549406, 31348891
Human	Colon	Glial cell	PLP1, S100B	32561858, 30270042, 33444816
Human	Colon	Goblet cell	MUC2, REG4, SPINK4, TFF3, CLCA1, ITLN1, AGR2, EPCAM, MUC1, SPDEF, ZG16	32302573, 28319088, 35726067, 35221332, 31753849, 31348891, 32199615, 35963362, 32753478, 35688820
Human	Colon	Granulocyte	CCL20, G0S2, IL1B, PTGS2, S100A12	34158745
Human	Colon	Helper T cell	GPR183, TSC22D3, YPEL5	34158745
Human	Colon	Inflammatory macrophage	IL1B	35221332
Human	Colon	Interstitial cell of Cajal	KIT, ANO1	32980343, 33444816
Human	Colon	Intestinal crypt stem cell	LGR5, ASCL2, DCLK1, OLFM4, PTK7	28319088, 19030762, 26549850, 22749579
Human	Colon	Macrophage	CD14, CD68, TREM2, C1QA, CAPG, CD163, CHI3L1, CSF1R, GPNMB	35549406, 28319088, 31348891, 34158745, 34793335
Human	Colon	Mast cell	TPSAB1, CPA3, KIT, MS4A2, TPSB2, CD22, CSF1, EPAS1, GATA2, PBX1, SIGLEC6, SIGLEC8, TIMP3, TPSD1, KRT1	35549406, 32302573, 28319088, 35221332, 32561858, 31348891, 32199615, 34910928
Human	Colon	Mature NK T cell	CD3D, CD3E, CD3G, KLRD1, KLRF1, PTPRC	35221332
Human	Colon	Memory B cell	CD27, CR2, MS4A1	35549406
Human	Colon	Migratory dendritic cell	CCL17, CCL19, CCR7, BIRC2, BIRC3, CCL22, CD200, CD274, CD80, ENO3, FAS, FSCN1, IDO1, IL12B, IL4I1, LAMP3, MARCKS, PDCD1LG2, RELB, SOCS2, TRAF1	32269339, 32561858
Human	Colon	Monocyte	FCN1, S100A9, CD14, CEBPD, CXCL2, CXCR4, FCGR2A, FCGR3A, HLA-DQA1, HLA-DQB1, HSPA1A, HSPA1B, LYZ, MAFB, MKI67, PRDM1, TOP2A	35549406, 32302573, 35221332, 31348891, 34158745
Human	Colon	Mucosal invariant T cell	SLC4A10, KLRB1, TRAV1-2	35549406, 34417225
Human	Colon	Myelocyte	CSTA, FTL, S100A8	35549406
Human	Colon	Myofibroblast cell	ACTA2, MYH11, ACTG2, MYL9, PDGFA, PLN, TAGLN	28319088, 35649411, 32561858, 30270042, 31348891
Human	Colon	Naive B cell	IGHD, IGHM, TCL1A	35549406
Human	Colon	Naive thymus-derived CD4-positive, alpha-beta T cell	CCR7, LEF1, SELL, TCF7	34793335
Human	Colon	Natural killer cell	CX3CR1, GNLY, XCL2, DEFA5, ELF3, FCGR3A, FCGR3B, FGFBP2, GZMB, GZMK, KLRC1, KLRD1, KLRF1, KRT13, KRT8, KRT86, NCAM1, NCR1, NKG7, NTS, PHGR1, PIGR, TPSAB1, TPSB2, XCL1	35549406, 32302573, 36460793, 32561858, 31348891, 34158745, 34417225
Human	Colon	Neuron	DSCAM, ELAVL4, SNAP25, SYT1, UCHL1	33444816
Human	Colon	Neutrophil	FCGR3B, S100A8, S100A9, CCL3, CCL4, CSF3R, CXCL1, CXCL8, IL1B, PROK2, S100A12, VEGFA	32561858, 34417225
Human	Colon	Non-classical monocyte	C1QA, CX3CR1, FCGR3A	35549406
Human	Colon	Paneth cell	CA7, SPIB	35688820
Human	Colon	Paneth cell of colon	CA4, CA7, LYZ, SPIB	31753849
Human	Colon	Pericyte	PDGFRB, RGS5	32561858, 30270042, 31348891
Human	Colon	Plasma cell	IGHA1, IGHG1, IGHG2, IGHG3, IGHG4, MZB1, APOE, CD247, CD79A, IGHA2, IGLL5	36460793, 35221332, 30270042, 31348891, 34158745, 34910928, 34417225
Human	Colon	Plasmablast	JCHAIN, MZB1, XBP1	35549406
Human	Colon	Plasmacytoid dendritic cell	IRF7, LILRA4, CCDC50, CXCR3, GAS6, IL3RA, IRF4, IRF8, LY9, PLD4, SELL, SLC15A4, SOX4, SPIB	32302573, 32561858
Human	Colon	Progenitor cell	ADH1C, ATP5MC1, MGST1, PEBP1, RPL5, RPL6, TXN	31753849
Human	Colon	Regulatory T cell	FOXP3, CTLA4, DUSP1, IL2RA, KLF2, RANBP1	35549406, 31348891, 34793335, 34417225
Human	Colon	Secretory progenitor cell	HES6, KIF19, L1TD1, STMN1	35963362
Human	Colon	Smooth muscle cell	ACTG2, MYH11, PDGFRA	32980343
Human	Colon	Stem cell	LGR5, ASCL2, SMOC2, AGR2, EPHB2, LRIG1, PRSS23, PTPRO, RGMB, TUBA1A	32302573, 35726067, 36460793, 35221332, 31753849, 31348891, 35963362, 31178140
Human	Colon	Stromal cell	RPS12, RPS24, RPS27, SLC12A2	30270042, 31348891, 32753478
Human	Colon	T cell	CD3D, CD3E, CD2, CD3G, TRBC2, TRAC, CCL5, MKI67, TOP2A	35549406, 28319088, 36460793, 32561858, 31348891, 32199615, 34910928, 35697807, 32753478
Human	Colon	T follicular helper cell	CXCR5, ICOS, PDCD1	35549406
Human	Colon	T-helper 1 cell	CCL5, CXCR3, TBX21	35549406
Human	Colon	T-helper 17 cell	CCR6, IL7R, KLRB1, ZBTB16	35549406
Human	Colon	Tip cell	ESM1, NID2	32561858
Human	Colon	Tissue-resident macrophage	ANPEP, AQP9, BTG2, C1QA, C1QB, C1QC, CALR, CCL3L3, CD163, CD36, CD83, CLEC10A, CREM, CTSL, CXCL3, EGR1, EREG, GPR132, GPR183, HES1, HIF1A, HLA-DQB1, IL10, IL1B, KLF2, KLF4, LYVE1, MARCO, METRNL, MRC1, NFKB2, NLRP3, PLAUR, PLTP, PTGS2, REL, SELENOP, SNX6, STAB1, THBS1, VEGFA	32302573
Human	Colon	Transit amplifying cell	CCNB1, CCNB2, CDC20, CDCA7, CDKN3, GINS2, HMGB2, LDHB, MCM5, PCNA, RRM2, TOP2A, UBE2C	31753849, 31348891, 35963362
Human	Colon	Tumor-associated macrophage	AQP9, ATF3, C1CB, C1QA, C1QC, CEBPB, CXCL2, ENG, EREG, FCGR1A, FPR3, GPNMB, IL1RN, MAF, MAFB, MEF2A, MERTK, MS4A4A, NDRG1, NRP1, OLR1, PA2G4, PHLDA1, SIRPA, SLAMF8, SLCO2B1, SPP1, TNS3, TREM2, VEGFA	32302573
Human	Colon	Type 1 conventional dendritic cell	CLEC9A, BATF3, XCR1, ANXA6, CADM1, CD40, CLIC2, CST7, ETV3, ID2, IDO1, IL6ST, NET1, PTDSS1, SCARB1, TNFRSF10B	35549406, 32302573, 32561858, 31348891
Human	Colon	Type 2 conventional dendritic cell	CD1C, CLEC10A, FCER1A, ADAM28, ADAM8, ARAF, AXL, FCGR2B, HMGA1, IRF4, LY86, PFDN1, SIRPA, TIMM13	35549406, 32302573, 32561858, 31348891
Human	Colon	Vein endothelial cell	ACKR1, SELP	32561858