Species	Tissue	CellType	Marker	Resource
Human	Breast	Adventitial cell	MYH11, MYLK, RGS5, TAGLN, ACTA2, CAV1, CD36, MCAM, PDGFRB	32790115
Human	Breast	Alternatively activated macrophage	HLA-DR family	26008983
Human	Breast	B cell	CD19, CD79A, MS4A1, IGKC, BANK1, CCL3, CCR7, CD24, CD40, CD53, CD74, IGHG3, IGHG4, IGHM, IGLC2, IGLC3, IGLL1, IGLL5, IRF4, LSP1, PTPRC, SSR4, VIM	35549429, 31623682, 33349700, 36077333, 35314812, 33950524, 34965952, 32790115
Human	Breast	Basal cell	ACTA2, KRT5, KRT14, MYLK, TP63, CDH3, KRT17, MME, NFIB, OXTR, SNAI2, TAGLN, VIM	34977686, 29795293, 33950524, 33291647, 35617956, 10639738
Human	Breast	Cancer-associated fibroblast	COL1A1, CXCL12, FAP, FN1, MMP11, PDGFRA, PDPN, POSTN, SPARC, VIM	34965952, 32790115
Human	Breast	CD4-positive, alpha-beta T cell	CD4, CD40LG, IL7R	32790115
Human	Breast	CD8-positive, alpha-beta cytotoxic T cell	CD8A, CD3D, C2, CD2, CD28, CD3E, CD3G, CD69, CD7, CD8B, GNLY, GZMA, GZMB, GZMK, IL1B, LAPTM5, NKG7, PRF1, PTPRC, TNF, VIM	35549429, 31623682, 33291647
Human	Breast	CD8-positive, alpha-beta T cell	CD8A, GZMH	32790115
Human	Breast	Dendritic cell	BATF3, ITGAE, ITGAM, ITGAX, MRC1, MS4A6A, TYROBP	35549429, 33988830
Human	Breast	Endothelial cell	PECAM1, VWF, CDH5, CLDN5, EMCN, ACKR1, ADGRL4, AQP1, CD34, CD36, CLEC14A, EDN1, EFNB2, ENG, ESAM, IFI27, IGFBP7, IL3RA, KDR, PLVAP, PTPRB, SELE, SELP, SERPINH1, SPARCL1, VIM	33988830, 34977686, 31623682, 32457901, 36077333, 35314812, 33950524, 33291647, 34965952, 33727227, 32790115
Human	Breast	Endothelial cell of lymphatic vessel	CCL21, CDH5, FLT4, LYVE1, MCAM, MMRN1, PECAM1, PROX1, RELN	35549429, 35617956
Human	Breast	Endothelial cell of vascular tree	BACE2, CD300LG, CDH5, CLDN5, EGFL7, EPHB4, LDB2, NOSTRIN, PECAM1, PTPRB, RAMP3, VWF	35549429
Human	Breast	Epithelial cell	EPCAM, CDH1, KRT15, ERBB2, ESR1, ITGA6, KIT, KRT14, KRT18, KRT23, PGR, PIP, ALCAM, AR, AREG, AZGP1, CD24, CD44, CRABP2, CXCL17, Cytokeratin family, FOXA1, KRT16, KRT5, KRT6B, KRT7, KRT8, KRT81, MGP, MIEN1, MKI67, MUC1, MUCL1, PSMD3, PTN, SCGB2A2, SFRP1, SMN1, STC2, TCIM, TNFRSF11A, TOB1, TP63	35549429, 33988830, 34977686, 36077333, 35314812, 33950524, 33291647, 34965952, 32790115, 26564780, 29187227, 25572907, 22761812, 19375841, 19022565, 9645442
Human	Breast	Epithelial progenitor cell	CD24, CD44	23768049
Human	Breast	Fat cell	ADIPOQ, APOE, ACSL1, CFD, EBF1, FOXO1, G0S2, GHR, GJA4, LPIN1, PCOLCE, PLIN1, PLIN2, PPARG, STEAP4	35549429, 33988830, 34977686, 33291647
Human	Breast	Fibroblast	COL1A1, COL1A2, COL3A1, COL6A2, COL6A3, DCN, ALDH1A1, COL4A1, COL6A1, FAP, PDGFRA, PDPN, ACTA2, C5AR2, CCN2, COL14A1, COL18A1, COL5A1, COL5A2, COL6A6, CXCL12, DDR2, FBLN1, FBN1, FGF7, FN1, HGF, IGFBP3, IGFBP5, IL33, IL6, LUM, MME, MYOC, NEGR1, S100A4, SFRP2, SLIT2, VIM	35549429, 33988830, 34977686, 32457901, 35314812, 33950524, 33291647, 33727227, 32790115, 35617956, 29395328
Human	Breast	Helper T cell	CD4	35549429
Human	Breast	Hematopoietic stem cell	CD34, KIT, PROM1	22940915
Human	Breast	Hormone-sensing mammary epithelial cell	ESR1, PGR, PRLR	35617956
Human	Breast	Inflammatory macrophage	ROS1	26008983
Human	Breast	Luminal cell	ANKRD30A, ESR1, KRT19, KRT18, KRT8, EPCAM, FOXA1, KIT, KRT7, MUC1, PGR, SLPI, SYTL2, AFF3, AGR2, ELF5, FLOT2, HES2, KLF5, KRT15, MUC family, PRLR, PROM1, SOX10, SOX9, TFCP2L1	35549429, 33988830, 34977686, 32457901, 29795293, 33291647, 33727227, 32790115, 16541310, 11914275, 10639738
Human	Breast	Macrophage	CD14, CD68, CD163, CD74, CSF1R, ITGAM, ITGAX, LYZ, PTPRC, AKR1C1, C1QA, CCL2, CD33, CD36, CD4, CEBPD, CPM, FCGR3A, LAPTM5, LYVE1, MERTK, MR1, MRC1, MS4A4A, MS4A6A, MSR1, RBPJ, SLC11A1, VIM	35549429, 33988830, 31623682, 33950524, 33291647, 34965952
Human	Breast	Mammary alveolar cell	ELF5, KIT, PROM1	35617956
Human	Breast	Mast cell	CD69, CPA3, CTSG, FCER1A, HDC, KIT, TPSAB1, TPSB2	35549429, 34965952
Human	Breast	Mature NK T cell	GNLY, CCL4, CCL5, CD3D, IL32, IL7R, KLRD1, NCR1	35314812, 32790115
Human	Breast	Memory B cell	CD1C, CD24, CR2, CXCR3, FAS	35549429
Human	Breast	Mesenchymal cell	PDGFRB	36077333
Human	Breast	Mesenchymal stem cell	ENG, THY1, NT5E	22940915, 26191205
Human	Breast	Monocyte	AKR1C1, CD14, CSF1, FCGR3A, HMCN1, MSX1	35549429, 33988830
Human	Breast	Myoepithelial cell	TP63, KRT14, KRT5, ACTA2, KRT17, Calponin family, MME, SMN1, TAGLN, ALPG, CALD1, CD44, CDH3, CNN3, IL9, ITGB1, KRT16, LGALS7, MFAP5, MYH11	35549429, 33988830, 32457901, 29795293, 33291647, 34965952, 33727227, 32790115, 22940915, 16384708, 12653579, 16398404, 26630681, 20382700, 17580273, 17525625, 15024707, 12502930, 12461063, 6639390, 30320661, 28549030
Human	Breast	Myofibroblast cell	ACTA2, COL1A1, COL3A1, SDC1, SERPINH1, VIM	31623682
Human	Breast	Naive B cell	CD69, CD80, CD86, FCER2	35549429
Human	Breast	Natural killer cell	GNLY, NCAM1, NKG7, HAVCR2, KLRD1, NCR1, XCL1	35549429, 33950524, 32790115, 29090365
Human	Breast	Neutrophil	CSF3R, CXCL6, S100A8, S100A9	32561858, 33988830
Human	Breast	Pericyte	ACTA2, CSPG4, MCAM, PDGFRB, RGS5, ANPEP, DES, MYO1B, RNF5, TAGLN, TPM2	35549429, 35314812, 33950524, 33727227
Human	Breast	Plasma cell	JCHAIN, CD79A, IGHA1, IGHG1, IGHG2, IGKC, IGLC7, LAPTM5, PTPRC, SDC1, VIM	31623682, 36077333, 33950524, 32790115
Human	Breast	Plasmacytoid dendritic cell	GPR183, GZMB, IRF7, JCHAIN, PLAC8, TCF4	35314812
Human	Breast	Progenitor cell	ITGA6, CD24, CD44, KIT, EPCAM, TP63, ALDH1A3, CD14, EHF, ELF5, FLOT2, GABRP, GNL3, ITGB1, KRT14, KRT19, PROCR, PROM1, SLPI	33988830, 34977686, 33727227, 23768049, 25269750, 25209720, 20660721, 20027313, 19651985, 19648928, 29795293
Human	Breast	Regulatory T cell	FOXP3	32790115
Human	Breast	Smooth muscle cell	ACTA2, MYH11, MYL9, TAGLN, ACTG2, ACTN1, CALD1, CNN1, DES, GUCY1A1, GUCY1B1, MYLK, MYOCD, PALLD, SMTN, VCL	35549429, 33291647
Human	Breast	Stromal cell	COL1A1, ITGB1, PDGFRB, S100A4, THY1	32790115
Human	Breast	T cell	CD3D, CD4, CD8A, CD3E, CD3G, PTPRC, CD2, CD247, CD28, CD69, CD8B, CD96, FOXP3, GZMA, GZMK, GZMM, IL7R, LAPTM5, MKI67, NKG7, SKAP1, THEMIS, TRAC, TRBC1, VIM	35549429, 33988830, 31623682, 36077333, 33950524, 34965952, 32790115
Human	Breast	T follicular helper cell	CD200, CXCL13	32790115
Human	Breast	Tissue-resident macrophage	CD163	35549429
Human	Breast	Tumor-associated macrophage	CD14, CD68	33950524